Domain mobility as probed by small-angle X-ray scattering may account for substrate access to the active site of two copper-dependent amine oxidases

Acta Crystallogr D Biol Crystallogr. 2014 Aug;70(Pt 8):2101-10. doi: 10.1107/S1399004714012140. Epub 2014 Jul 25.

Abstract

Amine oxidases are a family of dimeric enzymes that contain one copper(II) ion and one 2,4,5-trihydroxyphenyalanine quinone per subunit. Here, the low-resolution structures of two Cu/TPQ amine oxidases from lentil (Lens esculenta) seedlings and from Euphorbia characias latex have been determined in solution by small-angle X-ray scattering. The active site of these enzymes is highly buried and requires a conformational change to allow substrate access. The study suggests that the funnel-shaped cavity located between the D3 and D4 domains is narrower within the crystal structure, whereas in solution the D3 domain could undergo movement resulting in a protein conformational change that is likely to lead to easier substrate access.

Keywords: SAXS; TOPA; TPQ; amine oxidase; conformational change; copper; domain movement.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amine Oxidase (Copper-Containing) / chemistry
  • Amine Oxidase (Copper-Containing) / metabolism*
  • Amino Acid Sequence
  • Catalytic Domain
  • Copper / metabolism*
  • Electrophoresis, Polyacrylamide Gel
  • Molecular Sequence Data
  • Scattering, Small Angle
  • Sequence Homology, Amino Acid
  • Substrate Specificity

Substances

  • Copper
  • Amine Oxidase (Copper-Containing)