Efficient UV-induced charge separation and recombination in an 8-oxoguanine-containing dinucleotide

Proc Natl Acad Sci U S A. 2014 Aug 12;111(32):11612-7. doi: 10.1073/pnas.1404411111. Epub 2014 Jul 28.

Abstract

During the early evolution of life, 8-oxo-7,8-dihydro-2'-deoxyguanosine (O) may have functioned as a proto-flavin capable of repairing cyclobutane pyrimidine dimers in DNA or RNA by photoinduced electron transfer using longer wavelength UVB radiation. To investigate the ability of O to act as an excited-state electron donor, a dinucleotide mimic of the FADH2 cofactor containing O at the 5'-end and 2'-deoxyadenosine at the 3'-end was studied by femtosecond transient absorption spectroscopy in aqueous solution. Following excitation with a UV pulse, a broadband mid-IR pulse probed vibrational modes of ground-state and electronically excited molecules in the double-bond stretching region. Global analysis of time- and frequency-resolved transient absorption data coupled with ab initio quantum mechanical calculations reveal vibrational marker bands of nucleobase radical ions formed by electron transfer from O to 2'-deoxyadenosine. The quantum yield of charge separation is 0.4 at 265 nm, but decreases to 0.1 at 295 nm. Charge recombination occurs in 60 ps before the O radical cation can lose a deuteron to water. Kinetic and thermodynamic considerations strongly suggest that all nucleobases can undergo ultrafast charge separation when π-stacked in DNA or RNA. Interbase charge transfer is proposed to be a major decay pathway for UV excited states of nucleic acids of great importance for photostability as well as photoredox activity.

Keywords: DNA charge transfer states; DNA photophysics; ab initio calculations; photoreactivation; time-resolved vibrational spectroscopy.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Base Pairing
  • Electron Transport / radiation effects
  • Guanine / analogs & derivatives*
  • Guanine / chemistry
  • Kinetics
  • Models, Chemical
  • Oligonucleotides / chemistry*
  • Oligonucleotides / radiation effects*
  • Photochemical Processes
  • Quantum Theory
  • Spectrophotometry, Atomic
  • Spectroscopy, Fourier Transform Infrared
  • Thermodynamics
  • Ultraviolet Rays

Substances

  • Oligonucleotides
  • 8-hydroxyguanine
  • Guanine