Crystallization and preliminary X-ray diffraction analysis of Xyn30D from Paenibacillus barcinonensis

Acta Crystallogr F Struct Biol Commun. 2014 Jul;70(Pt 7):963-6. doi: 10.1107/S2053230X14012035. Epub 2014 Jun 19.

Abstract

Xyn30D, a new member of a recently identified group of xylanases, has been purified and crystallized. Xyn30D is a bimodular enzyme composed of an N-terminal catalytic domain belonging to glycoside hydrolase family 30 (GH30) and a C-terminal family 35 carbohydrate-binding domain (CBM35) able to bind xylans and glucuronic acid. Xyn30D shares the characteristic endo mode of action described for GH30 xylanases, with the hydrolysis of the β-(1,4) bonds of xylan being directed by α-1,2-linked glucuronate moieties, which have to be placed at the -2 subsite of the xylanase active site. Crystals of the complete enzyme were obtained and a full data set to 2.3 Å resolution was collected using a synchrotron X-ray source. This represents the first bimodular enzyme with the domain architecture GH30-CBM35. This study will contribute to the understanding of the role that the different xylanases play in the depolymerization of glucuronoxylan.

Keywords: CBM35; GH30; Paenibacillus barcinonensis; xylanase.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Proteins / chemistry*
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Cloning, Molecular
  • Crystallization
  • Crystallography, X-Ray
  • Endo-1,4-beta Xylanases / chemistry*
  • Endo-1,4-beta Xylanases / genetics
  • Endo-1,4-beta Xylanases / metabolism
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Gene Expression
  • Glucuronic Acid / chemistry*
  • Paenibacillus / chemistry*
  • Paenibacillus / enzymology
  • Protein Binding
  • Protein Structure, Tertiary
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / genetics
  • Recombinant Proteins / metabolism
  • Substrate Specificity
  • Xylans / chemistry*

Substances

  • Bacterial Proteins
  • Recombinant Proteins
  • Xylans
  • Glucuronic Acid
  • Endo-1,4-beta Xylanases