Transcriptional changes in Manila clam (Ruditapes philippinarum) in response to Brown Ring Disease

Fish Shellfish Immunol. 2014 Nov;41(1):2-11. doi: 10.1016/j.fsi.2014.05.022. Epub 2014 Jun 2.

Abstract

Brown Ring Disease (BRD) is a bacterial infection affecting the economically-important clam Ruditapes philippinarum. The disease is caused by a bacterium, Vibrio tapetis, that colonizes the edge of the mantle, altering the biomineralization process and normal shell growth. Altered organic shell matrices accumulate on the inner face of the shell leading to the formation of the typical brown ring in the extrapallial space (between the mantle and the shell). Even though structural and functional changes have been described in solid (mantle) and fluid (hemolymph and extrapallial fluids) tissues from infected clams, the underlying molecular alterations and responses remain largely unknown. This study was designed to gather information on clam molecular responses to the disease and to compare focal responses at the site of the infection (mantle and extrapallial fluid) with systemic (hemolymph) responses. To do so, we designed and produced a Manila clam expression oligoarray (15K Agilent) using transcriptomic data available in public databases and used this platform to comparatively assess transcriptomic changes in mantle, hemolymph and extrapallial fluid of infected clams. Results showed significant regulation in diseased clams of molecules involved in pathogen recognition (e.g. lectins, C1q domain-containing proteins) and killing (defensin), apoptosis regulation (death-associated protein, bcl-2) and in biomineralization (shell matrix proteins, perlucin, galaxin, chitin- and calcium-binding proteins). While most changes in response to the disease were tissue-specific, systemic alterations included co-regulation in all 3 tested tissues of molecules involved in microbe recognition and killing (complement-related factors, defensin). These results provide a first glance at molecular alterations and responses caused by BRD and identify targets for future functional investigations.

Keywords: Biomineralization; Extrapallial fluid; Gene expression; Immunity; Oligoarray.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Animals
  • Bivalvia / genetics
  • Bivalvia / immunology
  • Bivalvia / microbiology*
  • Gene Expression Profiling / methods
  • Gene Expression Regulation / genetics
  • Gene Expression Regulation / immunology*
  • Gene Ontology
  • Hemolymph / immunology
  • Hemolymph / microbiology
  • Oligonucleotide Array Sequence Analysis / methods
  • Transcriptome / genetics
  • Transcriptome / immunology*
  • Vibrio / immunology*