Identification and characterization of a differentially expressed protein (CAPZB) in skeletal muscle between Meishan and Large White pigs

Gene. 2014 Jul 10;544(2):107-13. doi: 10.1016/j.gene.2014.05.001. Epub 2014 May 2.

Abstract

Actin capping protein beta (CAPZB) protein was identified with considerable differences in the longissimus dorsi muscle between Large White and Meishan pigs using proteomics approach. However, in pigs, the information on CAPZB is very limited. In this study, we cloned and characterized the porcine actin capping protein beta (CAPZB) gene. In addition, we present two novel porcine CAPZB splice variants CAPZB1 and CAPZB2. CAPZB1 was expressed in all twenty tissues. However, CAPZB2 was predominantly expressed in the skeletal muscle and heart. In addition, the two isoforms had different expression profiles during the skeletal muscle development and between breeds. Moreover, the SNP T394G was identified in the coding region of the CAPZB gene, which was significantly associated with the carcass traits including the LFW, CFW, SFT and LEA. Data presented in our study suggests that the CAPZB gene may be a candidate gene of meat production trait and provides useful information for further studies on its roles in porcine skeletal muscle.

Keywords: Actin capping protein; Alternative splicing; Pig; SNP; Skeletal muscle.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Base Sequence
  • CapZ Actin Capping Protein / genetics*
  • Cloning, Molecular
  • Female
  • Gene Expression Profiling
  • Gene Frequency
  • Genotype
  • Male
  • Meat*
  • Molecular Sequence Data
  • Muscle Development / genetics
  • Muscle, Skeletal / metabolism*
  • Polymorphism, Single Nucleotide
  • Protein Isoforms / genetics
  • Sequence Alignment
  • Sequence Analysis, DNA
  • Swine / genetics*

Substances

  • CapZ Actin Capping Protein
  • Protein Isoforms