Solvent effect on the crystal morphology of 2,6-diamino-3,5-dinitropyridine-1-oxide: a molecular dynamics simulation study

J Mol Graph Model. 2014 May:50:71-7. doi: 10.1016/j.jmgm.2014.03.005. Epub 2014 Apr 3.

Abstract

The attachment energy (AE) calculations were performed to predict the growth morphology of 2,6-diamino-3,5-dinitropyridine-1-oxide (ANPyO) in vacuum. The molecular dynamics (MD) method was applied to simulate the interaction of trifluoroacetic acid solvent with the habit faces and the corrected AE model was adopted to predict the growth habit of ANPyO in the solvent. The results indicate that the growth morphology of ANPyO in vacuum is dominated by (110), (100), (10-1) and (11-2) faces. The corrected AE energies change in the order of (110)>(10-1)>(11-2)>(100), which causes the crystal morphology to become very close to a flake in trifluoroacetic acid solvent and accords well with the results obtained from experiments. The radial distribution function analysis shows that the solvent molecules adsorb on the ANPyO faces mainly via the solvent-crystal face interactions of hydrogen bonds, Coulomb and Van der Waals forces. In addition to the above results, the analysis of diffusion coefficient of trifluoroacetic acid molecules on the crystal growth faces shows that the growth habit is also affected by the diffusion capacity of trifluoroacetic acid molecules. These suggestions may be useful for the formulation design of ANPyO.

Keywords: 2,6-Diamino-3,5-dinitropyridine-1-oxide; Crystal morphology; Molecular dynamics simulation; Self-diffusion coefficient; The attachment energy model.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Hydrogen Bonding
  • Molecular Dynamics Simulation*
  • Organic Chemicals / chemistry*
  • Protein Conformation
  • Solvents / chemistry*
  • Thermodynamics

Substances

  • Organic Chemicals
  • Solvents