Mechanistic studies on formation of the dinitrosyl iron complex of the [2Fe-2S] cluster of SoxR protein

J Biochem. 2014 Sep;156(3):163-72. doi: 10.1093/jb/mvu029. Epub 2014 Apr 18.

Abstract

The transcriptional activation of SoxR in Escherichia coli occurs through direct modification of the [2Fe-2S] by nitric oxide (NO) to form a dinitrosyl iron complex (DNIC). Here, we investigated the reactions of NO with [2Fe-2S] clusters of SoxR; the results were compared with those obtained for spinach ferredoxin (Fd). UV-visible absorption and ESR spectra of SoxR upon treatment with an NO donor showed the formation of DNIC of SoxR efficiently, whereas those of Fd exhibited small changes. Upon pulse radiolysis of a deaerated solution of SoxR in the presence of sodium nitrite, a biphasic change in absorption, consisting of a faster phase and a slower phase, was observed. The slower phase fraction was increased with increases in the [NO]/[SoxR] molar ratio, reaching a plateau at ∼2 equivalents of NO. On the basis of these results, we propose that the faster phase corresponds to the reaction of the first NO molecule with [2Fe-2S] of SoxR, followed by the reaction of the second NO molecule. In the reaction of NO with Fd, no slower phase was observed. These results suggest that the reaction of the second equivalent of NO is an important process for the formation of DNIC.

Keywords: dinitrosyl iron complex; iron–sulfur cluster; nitric oxide; pulse radiolysis; transcription factor.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Proteins / chemistry*
  • Bacterial Proteins / metabolism
  • Electron Spin Resonance Spectroscopy
  • Ferredoxins / chemistry
  • Ferredoxins / metabolism
  • Hydrazines / pharmacology
  • Iron / chemistry*
  • Iron / metabolism
  • Iron-Sulfur Proteins / chemistry*
  • Iron-Sulfur Proteins / metabolism
  • Kinetics
  • Models, Chemical
  • Nitric Oxide / chemistry*
  • Nitric Oxide / metabolism
  • Nitric Oxide Donors / pharmacology
  • Nitrogen Oxides / chemistry*
  • Nitrogen Oxides / metabolism
  • Oxidation-Reduction
  • Plant Proteins / chemistry
  • Plant Proteins / metabolism
  • Protein Binding / drug effects
  • Protein Binding / radiation effects
  • Sodium Nitrite / chemistry
  • Sodium Nitrite / metabolism
  • Spectrophotometry
  • Spinacia oleracea / metabolism
  • Sulfur / chemistry
  • Sulfur / metabolism
  • Transcription Factors / chemistry*
  • Transcription Factors / metabolism

Substances

  • 3-(2-hydroxy-1-methyl-2-nitrosohydrazino)-N-methyl-1-propanamine
  • Bacterial Proteins
  • Ferredoxins
  • Hydrazines
  • Iron-Sulfur Proteins
  • Nitric Oxide Donors
  • Nitrogen Oxides
  • Plant Proteins
  • Transcription Factors
  • SoxR protein, Bacteria
  • Nitric Oxide
  • dinitrosyl iron complex
  • Sulfur
  • Iron
  • Sodium Nitrite