Recombination in the evolution of enterovirus C species sub-group that contains types CVA-21, CVA-24, EV-C95, EV-C96 and EV-C99

PLoS One. 2014 Apr 10;9(4):e94579. doi: 10.1371/journal.pone.0094579. eCollection 2014.

Abstract

Genetic recombination is considered to be a very frequent phenomenon among enteroviruses (Family Picornaviridae, Genus Enterovirus). However, the recombination patterns may differ between enterovirus species and between types within species. Enterovirus C (EV-C) species contains 21 types. In the capsid coding P1 region, the types of EV-C species cluster further into three sub-groups (designated here as A-C). In this study, the recombination pattern of EV-C species sub-group B that contains types CVA-21, CVA-24, EV-C95, EV-C96 and EV-C99 was determined using partial 5'UTR and VP1 sequences of enterovirus strains isolated during poliovirus surveillance and previously published complete genome sequences. Several inter-typic recombination events were detected. Furthermore, the analyses suggested that inter-typic recombination events have occurred mainly within the distinct sub-groups of EV-C species. Only sporadic recombination events between EV-C species sub-group B and other EV-C sub-groups were detected. In addition, strict recombination barriers were inferred for CVA-21 genotype C and CVA-24 variant strains. These results suggest that the frequency of inter-typic recombinations, even within species, may depend on the phylogenetic position of the given viruses.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Capsid Proteins / genetics*
  • Enterovirus C, Human / genetics*
  • Enterovirus Infections / virology
  • Evolution, Molecular*
  • Genome, Viral
  • Phylogeny
  • RNA, Viral / genetics*
  • Recombination, Genetic*

Substances

  • Capsid Proteins
  • RNA, Viral

Grants and funding

This study was supported by Academy of Finland. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.