A single molecule perspective on the functional diversity of in vitro evolved β-glucuronidase

J Am Chem Soc. 2014 Apr 23;136(16):5949-55. doi: 10.1021/ja412379p. Epub 2014 Apr 11.

Abstract

The mechanisms that drive the evolution of new enzyme activity have been investigated by comparing the kinetics of wild-type and in vitro evolved β-glucuronidase (GUS) at the single molecule level. Several hundred single GUS molecules were separated in large arrays of 62,500 ultrasmall reaction chambers etched into the surface of a fused silica slide to observe their individual substrate turnover rates in parallel by fluorescence microscopy. Individual GUS molecules feature long-lived but divergent activity states, and their mean activity is consistent with classic Michaelis-Menten kinetics. The large number of single molecule substrate turnover rates is representative of the activity distribution within an entire enzyme population. Partially evolved GUS displays a much broader activity distribution among individual enzyme molecules than wild-type GUS. The broader activity distribution indicates a functional division of work between individual molecules in a population of partially evolved enzymes that-as so-called generalists-are characterized by their promiscuous activity with many different substrates.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Escherichia coli / enzymology
  • Evolution, Molecular*
  • Glucuronidase / chemistry
  • Glucuronidase / metabolism*
  • Models, Molecular
  • Protein Conformation

Substances

  • Glucuronidase