A generic method for design of oligomer-specific antibodies

PLoS One. 2014 Mar 11;9(3):e90857. doi: 10.1371/journal.pone.0090857. eCollection 2014.

Abstract

Antibodies that preferentially and specifically target pathological oligomeric protein and peptide assemblies, as opposed to their monomeric and amyloid counterparts, provide therapeutic and diagnostic opportunities for protein misfolding diseases. Unfortunately, the molecular properties associated with oligomer-specific antibodies are not well understood, and this limits targeted design and development. We present here a generic method that enables the design and optimisation of oligomer-specific antibodies. The method takes a two-step approach where discrimination between oligomers and fibrils is first accomplished through identification of cryptic epitopes exclusively buried within the structure of the fibrillar form. The second step discriminates between monomers and oligomers based on differences in avidity. We show here that a simple divalent mode of interaction, as within e.g. the IgG isotype, can increase the binding strength of the antibody up to 1500 times compared to its monovalent counterpart. We expose how the ability to bind oligomers is affected by the monovalent affinity and the turnover rate of the binding and, importantly, also how oligomer specificity is only valid within a specific concentration range. We provide an example of the method by creating and characterising a spectrum of different monoclonal antibodies against both the Aβ peptide and α-synuclein that are associated with Alzheimer's and Parkinson's diseases, respectively. The approach is however generic, does not require identification of oligomer-specific architectures, and is, in essence, applicable to all polypeptides that form oligomeric and fibrillar assemblies.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alzheimer Disease / metabolism
  • Alzheimer Disease / pathology
  • Amyloid beta-Peptides / chemistry
  • Amyloid beta-Peptides / immunology
  • Animals
  • Antibodies / immunology*
  • Antibodies, Monoclonal / immunology
  • Antibody Affinity / immunology
  • Epitopes / chemistry
  • Epitopes / immunology*
  • Female
  • Hippocampus / metabolism
  • Hippocampus / pathology
  • Kinetics
  • Mice
  • Parkinson Disease / metabolism
  • Parkinson Disease / pathology
  • Protein Binding
  • Protein Multimerization / immunology*
  • Proteins / chemistry
  • Proteins / immunology*
  • alpha-Synuclein / chemistry
  • alpha-Synuclein / immunology
  • alpha-Synuclein / metabolism

Substances

  • Amyloid beta-Peptides
  • Antibodies
  • Antibodies, Monoclonal
  • Epitopes
  • Proteins
  • alpha-Synuclein

Grants and funding

This work was supported by Parkinsonfonden, Insamlingsstiftelsen Umeå University, Alzheimerfonden, J.C. Kempe, the Swedish Research Council, Magn. Bergvalls stiftelse, O.E. och Edlas stiftelse, FAMY, Torsten Söderbergs stiftelse, Västerbottens läns lansting (ALF medel) and the Medical Faculty of Umeå University. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.