Comparative whole genome analysis of six diagnostic brucellaphages

Gene. 2014 May 15;541(2):115-22. doi: 10.1016/j.gene.2014.01.018. Epub 2014 Feb 13.

Abstract

Whole genome sequencing of six diagnostic brucellaphages, Tbilisi (Tb), Firenze (Fz), Weybridge (Wb), S708, Berkeley (Bk) and R/C, was followed with genomic comparisons including recently described genomes of the Tb phage from Mexico (TbM) and Pr phage to elucidate genomic diversity and candidate host range determinants. Comparative whole genome analysis revealed high sequence homogeneity among these brucellaphage genomes and resolved three genetic groups consistent with defined host range phenotypes. Group I was composed of Tb and Fz phages that are predominantly lytic for Brucella abortus and Brucella neotomae; Group II included Bk, R/C, and Pr phages that are lytic mainly for B. abortus, Brucella melitensis and Brucella suis; Group III was composed of Wb and S708 phages that are lytic for B. suis, B. abortus and B. neotomae. We found that the putative phage collar protein is a variable locus with features that may be contributing to the host specificities exhibited by different brucellaphage groups. The presence of several candidate host range determinants is illustrated herein for future dissection of the differential host specificity observed among these phages.

Keywords: Bacteriophage; Brucella; Brucellaphage; Comparative genomics.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacteriophage Typing
  • Bacteriophages / genetics*
  • Base Sequence
  • Brucella / classification
  • Brucella / isolation & purification*
  • Brucella / virology
  • DNA Primers / genetics
  • DNA, Viral / chemistry
  • DNA, Viral / genetics
  • Genetic Variation
  • Genome, Viral / genetics*
  • Genome-Wide Association Study
  • Genomics*
  • High-Throughput Nucleotide Sequencing
  • Host Specificity
  • Molecular Sequence Data
  • Open Reading Frames / genetics
  • Phenotype
  • Phylogeny
  • Polymorphism, Single Nucleotide
  • Sequence Analysis, DNA

Substances

  • DNA Primers
  • DNA, Viral

Associated data

  • GENBANK/KC556893
  • GENBANK/KC556894
  • GENBANK/KC556895
  • GENBANK/KC556896
  • GENBANK/KC556897
  • GENBANK/KC556898