A simplified approach to construct infectious cDNA clones of a tobamovirus in a binary vector

J Virol Methods. 2014 Mar:198:32-6. doi: 10.1016/j.jviromet.2013.12.024. Epub 2013 Dec 31.

Abstract

Infectious cDNA clones of RNA viruses are important tools to study molecular processes such as replication and host-virus interactions. However, the cloning steps necessary for construction of cDNAs of viral RNA genomes in binary vectors are generally laborious. In this study, a simplified method of producing an agro-infectious Pepper mild mottle virus (PMMoV) clone is described in detail. Initially, the complete genome of PMMoV was amplified by a single-step RT-PCR, cloned, and subcloned into a small plasmid vector under the T7 RNA polymerase promoter to confirm the infectivity of the cDNA clone through transcript inoculation. The complete genome was then transferred to a binary vector using a single-step, overlap-extension PCR. The selected clones were agro-infiltrated to Nicotiana benthamiana plants and showed to be infectious, causing typical PMMoV symptoms. No differences in host responses were observed when the wild-type PMMoV isolate, the T7 RNA polymerase-derived transcripts and the agroinfiltration-derived viruses were inoculated to N. benthamiana, Capsicum chinense PI 159236 and Capsicum annuum plants.

Keywords: Full-length cDNA clone; Overlap-extension PCR; PMMoV; Tobamovirus.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cloning, Molecular / methods*
  • DNA, Complementary / genetics*
  • DNA-Directed RNA Polymerases / genetics
  • DNA-Directed RNA Polymerases / metabolism
  • Genetic Vectors / genetics*
  • Genome, Viral / genetics
  • Nicotiana / virology
  • Plant Diseases / genetics
  • Promoter Regions, Genetic / genetics
  • RNA Viruses / genetics*
  • RNA, Viral / genetics
  • Tobamovirus / genetics*
  • Viral Proteins / genetics
  • Viral Proteins / metabolism

Substances

  • DNA, Complementary
  • RNA, Viral
  • Viral Proteins
  • bacteriophage T7 RNA polymerase
  • DNA-Directed RNA Polymerases