A simple "add and measure" FRET-based telomeric tandem repeat sequence detection and telomerase assay method

Org Biomol Chem. 2014 Feb 14;12(6):936-41. doi: 10.1039/c3ob42092b.

Abstract

A simple and sensitive method for measuring telomeric tandem repeat DNA and telomerase activity based on fluorescence resonance energy transfer (FRET) with a FAM-modified 12-mer ODN probe as a donor (fluorophore) and ethidium bromide (EB) as an acceptor (quencher) is proposed. When telomeric DNA and the FAM-modified probe form a duplex, EB intercalates between base-pairs, resulting in fluorescence quenching of FAM through FRET from FAM to EB. This method can be used to estimate the amount of telomeric DNAs in a sample solution as the molar concentration of the telomeric DNA unit [5'-(TTA GGG TTA GGG)-3']. A linear fluorescence quenching ratio was obtained in 5-1000 pM of telomeric DNA units by adjusting the amount of FAM-modified probe. A PCR-free telomerase activity assay using this FRET-based method could be applied to ≥400 HeLa cells per μL. This assay represents a novel technique for initial screenings of cancer diagnosis and is a facile method for quantifying telomeric DNA or other tandem repeat sequences.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • DNA / analysis*
  • DNA / metabolism
  • Fluorescence Resonance Energy Transfer*
  • HeLa Cells
  • Humans
  • Nucleic Acid Amplification Techniques*
  • Telomerase / metabolism*
  • Telomere / chemistry*
  • Telomere / metabolism

Substances

  • DNA
  • Telomerase