Contribution of transforming growth factor α polymorphisms to nonsyndromic orofacial clefts: a HuGE review and meta-analysis

Am J Epidemiol. 2014 Feb 1;179(3):267-81. doi: 10.1093/aje/kwt262. Epub 2013 Nov 15.

Abstract

We performed a meta-analysis of the association of transforming growth factor α gene (TGFA) polymorphisms with the risk of cleft lip with or without cleft palate (CL/P) or cleft palate (CP). In total, data from 29 studies were pooled for the following 3 polymorphisms: TGFA/TaqI, TGFA/BamHI, and TGFA/RasI in the TGFA gene. A fixed-effects or random-effects model was used to calculate the pooled odds ratios based on the results from the heterogeneity tests. A significantly increased CL/P or CP risk was observed in persons carrying a C2 allele at the TaqI polymorphism (odds ratio (OR) = 1.70, 95% confidence interval (CI): 1.41, 2.05) compared with those with a C1 allele (OR = 1.57, 95% CI: 1.23, 2.01). For the TGFA/BamHI polymorphism, carriers of the minor A1 allele had an estimated relative decrease in CL/P risk (OR = 0.44, 95% CI: 0.30, 0.64). These associations remained significant when only high-quality studies were included. However, no significant association was observed between the TGFA/RasI variant and CL/P risk. In summary, this meta-analysis provided a robust estimate of the positive association of the TGFA/TaqI polymorphism with both CL/P and CP and suggests that persons with an A1 allele may have a markedly decreased risk of CL/P.

Keywords: cleft lip with or without cleft palate; cleft palate; epidemiology; genetic association studies; genetics; meta-analysis; polymorphism; transforming growth factor α.

Publication types

  • Meta-Analysis
  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Cleft Lip / genetics*
  • Cleft Palate / genetics*
  • Genetic Association Studies
  • Genetic Markers
  • Humans
  • Models, Statistical
  • Odds Ratio
  • Polymorphism, Restriction Fragment Length*
  • Risk Assessment
  • Risk Factors
  • Transforming Growth Factor alpha / genetics*

Substances

  • Genetic Markers
  • Transforming Growth Factor alpha