Identification of new sphingomyelinases D in pathogenic fungi and other pathogenic organisms

PLoS One. 2013 Nov 1;8(11):e79240. doi: 10.1371/journal.pone.0079240. eCollection 2013.

Abstract

Sphingomyelinases D (SMases D) or dermonecrotic toxins are well characterized in Loxosceles spider venoms and have been described in some strains of pathogenic microorganisms, such as Corynebacterium sp. After spider bites, the SMase D molecules cause skin necrosis and occasional severe systemic manifestations, such as acute renal failure. In this paper, we identified new SMase D amino acid sequences from various organisms belonging to 24 distinct genera, of which, 19 are new. These SMases D share a conserved active site and a C-terminal motif. We suggest that the C-terminal tail is responsible for stabilizing the entire internal structure of the SMase D Tim barrel and that it can be considered an SMase D hallmark in combination with the amino acid residues from the active site. Most of these enzyme sequences were discovered from fungi and the SMase D activity was experimentally confirmed in the fungus Aspergillus flavus. Because most of these novel SMases D are from organisms that are endowed with pathogenic properties similar to those evoked by these enzymes alone, they might be associated with their pathogenic mechanisms.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Motifs / genetics
  • Amino Acid Sequence
  • Animals
  • Arthropod Proteins / chemistry
  • Arthropod Proteins / genetics
  • Arthropod Proteins / metabolism
  • Aspergillus flavus / enzymology
  • Aspergillus flavus / genetics
  • Bacterial Proteins / chemistry
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Biocatalysis
  • Catalytic Domain
  • Corynebacterium pseudotuberculosis / classification
  • Corynebacterium pseudotuberculosis / enzymology*
  • Corynebacterium pseudotuberculosis / genetics
  • Fungal Proteins / chemistry
  • Fungal Proteins / genetics
  • Fungal Proteins / metabolism
  • Fungi / classification
  • Fungi / enzymology*
  • Fungi / genetics
  • Ixodes / classification
  • Ixodes / enzymology*
  • Ixodes / genetics
  • Models, Molecular
  • Molecular Sequence Data
  • Phosphoric Diester Hydrolases / chemistry
  • Phosphoric Diester Hydrolases / genetics
  • Phosphoric Diester Hydrolases / metabolism*
  • Phylogeny
  • Protein Structure, Secondary
  • Protein Structure, Tertiary
  • Sequence Homology, Amino Acid
  • Sphingomyelins / chemistry
  • Sphingomyelins / metabolism
  • Spiders / classification
  • Spiders / enzymology*
  • Spiders / genetics

Substances

  • Arthropod Proteins
  • Bacterial Proteins
  • Fungal Proteins
  • Sphingomyelins
  • Phosphoric Diester Hydrolases
  • sphingomyelin phosphodiesterase D

Grants and funding

This work was supported by INCTTOX PROGRAM of Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq), Centre national de la recherche scientifique (CNRS) - Projet International de Coopération Scientifique [PICS no. 2474] and Coodernação de aperfeiçoamento de pessoal de nivel superior, Brazil – CAPES (Toxinologia no. 23038000825/2011-63). Izabella Pena Neshich received a PhD fellowship from FAPESP– 12/00235-5 and Goran Neshich received support from FAPESP (research project number 2009/16376-4). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.