Incorporating the excluded solvent volume and surface charges for computing solvation free energy

J Comput Chem. 2014 Jan 5;35(1):62-9. doi: 10.1002/jcc.23466. Epub 2013 Oct 15.

Abstract

Gauss's law or Poisson's equation is conventionally used to calculate solvation free energy. However, the near-solute dielectric polarization from Gauss's law or Poisson's equation differs from that obtained from molecular dynamics (MD) simulations. To mimic the near-solute dielectric polarization from MD simulations, the first-shell water was treated as two layers of surface charges, the densities of which are proportional to the electric field at the solvent molecule that is modeled as a hard sphere. The intermediate water was treated as a bulk solvent. An equation describing the solvation free energy of ions using this solvent scheme was derived using the TIP3P water model.

Keywords: continuum solvent model; dielectric polarization; surface water.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Molecular Dynamics Simulation
  • Solubility
  • Solvents / chemistry
  • Surface Properties
  • Thermodynamics*
  • Water / chemistry*

Substances

  • Solvents
  • Water