The aquatic systems responsible for water supply in the Brazilian Federal District (FD) have been threatened by anthropogenic pressures, especially considering the expressive demographic increase in the region during the last decades. The purposes of this research were: (a) to assess the water quality in streams located in the FD by monitoring physical-chemical variables; (b) to define baselines for these variables among different ecological status categories. The 14 investigated streams were sampled between 2006 and 2009, in the dry (August-September, 2006, 2008, 2009) and rainy (March-April, 2008, 2009) seasons. All sampling sites were classified in four categories ("very impacted", "impacted", "in transition" and "natural") using an adaptation of a rapid habitat assessment protocol. Differences in water quality among sites were generally well predicted in the four ecological status categories defined by the protocol, which showed a gradient in nutrient concentrations from reference sites classified as "natural" (medians: electrical conductivity = 7.3 μS cm(-1); nitrate = 0.040 mg L(-1); ammonium = 0.039 mg L(-1); soluble reactive phosphorus (SRP) = <0.001 mg L(-1); total phosphorus (TP) = 0.006 mg L(-1); ) to those classified as "very impacted" (medians: electrical conductivity = 87.7 μS cm(-1); nitrate = 0.247 mg L(-1); ammonium = 0.219 mg L(-1); SRP = 0.010 mg L(-1); TP = 0.035 mg L(-1)). Point sources inputs were the main factor for water quality deterioration. The nutrient baselines reported were relatively low when compared to data collected from reference areas in Brazil (e.g., São Paulo State) or temperate regions, especially for TP.