Hydrogen tunneling links protein dynamics to enzyme catalysis

Annu Rev Biochem. 2013:82:471-96. doi: 10.1146/annurev-biochem-051710-133623.

Abstract

The relationship between protein dynamics and function is a subject of considerable contemporary interest. Although protein motions are frequently observed during ligand binding and release steps, the contribution of protein motions to the catalysis of bond making/breaking processes is more difficult to probe and verify. Here, we show how the quantum mechanical hydrogen tunneling associated with enzymatic C-H bond cleavage provides a unique window into the necessity of protein dynamics for achieving optimal catalysis. Experimental findings support a hierarchy of thermodynamically equilibrated motions that control the H-donor and -acceptor distance and active-site electrostatics, creating an ensemble of conformations suitable for H-tunneling. A possible extension of this view to methyl transfer and other catalyzed reactions is also presented. The impact of understanding these dynamics on the conceptual framework for enzyme activity, inhibitor/drug design, and biomimetic catalyst design is likely to be substantial.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.
  • Review

MeSH terms

  • Catalysis
  • Enzymes / chemistry
  • Enzymes / physiology*
  • Hydrogen / chemistry*
  • Hydrogen / metabolism
  • Hydrogen / physiology
  • Kinetics
  • Models, Molecular
  • Protein Conformation
  • Proteins / chemistry
  • Proteins / physiology*
  • Thermodynamics*

Substances

  • Enzymes
  • Proteins
  • Hydrogen