Three-dimensional structure of carboxypeptidase T from Thermoactinomyces vulgaris in complex with N-BOC-L-leucine

Biochemistry (Mosc). 2013 Mar;78(3):252-9. doi: 10.1134/S0006297913030061.

Abstract

The 3D structure of recombinant bacterial carboxypeptidase T (CPT) in complex with N-BOC-L-leucine was determined at 1.38 Å resolution. Crystals for the X-ray study were grown in microgravity using the counter-diffusion technique. N-BOC-L-leucine and SO4(2-) ion bound in the enzyme active site were localized in the electron density map. Location of the leucine side chain in CPT-N-BOC-L-leucine complex allowed identification of the S1 subsite of the enzyme, and its structure was determined. Superposition of the structures of CPT-N-BOC-L-leucine complex and complexes of pancreatic carboxypeptidases A and B with substrate and inhibitors was carried out, and similarity of the S1 subsites in these three carboxypeptidases was revealed. It was found that SO4(2-) ion occupies the same position in the S1' subsite as the C-terminal carboxy group of the substrate.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Proteins / chemistry*
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Carboxypeptidases / chemistry*
  • Carboxypeptidases / genetics
  • Carboxypeptidases / metabolism
  • Crystallography, X-Ray
  • Imaging, Three-Dimensional
  • Leucine / analogs & derivatives*
  • Leucine / chemistry
  • Models, Molecular
  • Protein Conformation
  • Thermoactinomyces / chemistry
  • Thermoactinomyces / enzymology*
  • Thermoactinomyces / genetics

Substances

  • Bacterial Proteins
  • Carboxypeptidases
  • CPT protein, Thermoactinomyces vulgaris
  • Leucine