Rhizosphere bacteria of Costularia spp. from ultramafic soils in New Caledonia: diversity, tolerance to extreme edaphic conditions, and role in plant growth and mineral nutrition

Can J Microbiol. 2013 Mar;59(3):164-74. doi: 10.1139/cjm-2012-0570. Epub 2012 Nov 29.

Abstract

Rhizosphere bacteria were isolated from Costularia spp., pioneer sedges from ultramafic soils in New Caledonia, which is a hotspot of biodiversity in the South Pacific. Genus identification, ability to tolerate edaphic constraints, and plant-growth-promoting (PGP) properties were analysed. We found that 10(5) colony-forming units per gram of root were dominated by Proteobacteria (69%) and comprised 21 genera, including Burkholderia (28%), Curtobacterium (15%), Bradyrhizobium (9%), Sphingomonas (8%), Rhizobium (7%), and Bacillus (5%). High proportions of bacteria tolerated many elements of the extreme edaphic conditions: 82% tolerated 100 μmol·L(-1) chromium, 70% 1 mmol·L(-1) nickel, 63% 10 mmol·L(-1) manganese, 24% 1 mmol·L(-1) cobalt, and 42% an unbalanced calcium/magnesium ratio (1/16). These strains also exhibited multiple PGP properties, including the ability to produce ammonia (65%), indole-3-acetic acid (60%), siderophores (52%), and 1-aminocyclopropane-1-carboxylate (ACC) deaminase (39%); as well as the capacity to solubilize phosphates (19%). The best-performing strains were inoculated with Sorghum sp. grown on ultramafic substrate. Three strains significantly enhanced the shoot biomass by up to 33%. The most successful strains influenced plant nutrition through the mobilization of metals in roots and a reduction of metal transfer to shoots. These results suggest a key role of these bacteria in plant growth, nutrition, and adaptation to the ultramafic constraints.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacteria / genetics
  • Bacteria / growth & development*
  • Bacteria / isolation & purification
  • Bacteria / metabolism
  • Base Sequence
  • Biodiversity
  • Biomass
  • Carbon-Carbon Lyases / metabolism
  • Cyperaceae / growth & development
  • Cyperaceae / metabolism
  • Cyperaceae / microbiology*
  • Indoleacetic Acids / metabolism
  • Metals, Heavy / metabolism*
  • Minerals / metabolism*
  • Molecular Sequence Data
  • New Caledonia
  • Nitrogen Fixation
  • Plant Roots / growth & development
  • Plant Roots / metabolism
  • Plant Roots / microbiology
  • Plants / metabolism
  • Quaternary Ammonium Compounds / metabolism
  • RNA, Ribosomal, 16S / chemistry
  • Rhizobium / metabolism
  • Rhizosphere*
  • Siderophores / metabolism
  • Soil Microbiology*
  • Soil Pollutants / metabolism

Substances

  • Indoleacetic Acids
  • Metals, Heavy
  • Minerals
  • Quaternary Ammonium Compounds
  • RNA, Ribosomal, 16S
  • Siderophores
  • Soil Pollutants
  • indoleacetic acid
  • 1-aminocyclopropane-1-carboxylate deaminase
  • Carbon-Carbon Lyases

Associated data

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