Genetic interactions of Arabidopsis thaliana damaged DNA binding protein 1B (DDB1B) with DDB1A, DET1, and COP1

G3 (Bethesda). 2013 Mar;3(3):493-503. doi: 10.1534/g3.112.005249. Epub 2013 Mar 1.

Abstract

Damaged DNA Binding protein 1 (DDB1)-CULLIN4 E3 ubiquitin ligase complexes have been implicated in diverse biological processes in a range of organisms. Arabidopsis thaliana encodes two homologs of DDB1, DDB1A, and DDB1B. In this study we use a viable partial loss of function allele of DDB1B, ddb1b-2, to examine genetic interactions with DDB1A, DET1 and COP1. Although the ddb1b-2 ddb1a double mutant is lethal, ddb1a ddb1b-2/+ and ddb1b-2 ddb1a/+ heterozygotes exhibit few developmental phenotypes but do exhibit decreased tolerance of ultraviolet light. In addition, germination in ddb1a and ddb1a ddb1b-2/+ was found to be sensitive to salt and mannitol, and both DDB1 single mutants as well as the heterozygotes exhibited heat sensitivity. DE-ETIOLATED1 (DET1) and CONSTITUTIVE PHOTOMORPHOGENIC1 (COP1) are negative regulators of light development which interact with DDB1-CUL4 complexes. Although ddb1a strongly enhances det1 phenotypes in both dark- and light-grown seedlings, ddb1b-2 weakly enhanced the det1 short hypocotyl phenotype in the dark, as well as enhancing anthocyanin levels and suppressing the det1 low chlorophyll phenotype in light-grown seedlings. In adults, ddb1a suppresses det1 early flowering and enhances the det1 dwarf phenotype. A similar trend was observed in ddb1b-2 det1 double mutants, although the effects were smaller in magnitude. In cop1 mutants, ddb1b-2 enhanced the cop1-4 short hypocotyl phenotype in dark and light, enhanced anthocyanin levels in cop1-1 in the light, but had no effect in adults. Thus the requirement for DDB1B varies in the course of development, from COP1-specific effects in hypocotyls to DET1-specific in adults.

Keywords: COP1; DDB1A; DDB1B; DET1; light.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alleles
  • Anthocyanins / genetics
  • Anthocyanins / metabolism
  • Arabidopsis / drug effects
  • Arabidopsis / genetics*
  • Arabidopsis / metabolism
  • Arabidopsis Proteins / genetics*
  • Arabidopsis Proteins / metabolism
  • DNA-Binding Proteins / genetics*
  • DNA-Binding Proteins / metabolism
  • Darkness
  • Flowers / genetics
  • Flowers / growth & development
  • Gene Expression Regulation, Plant
  • Genes, Plant
  • Germination / genetics
  • Heterozygote
  • Hot Temperature
  • Hypocotyl / drug effects
  • Hypocotyl / genetics
  • Hypocotyl / metabolism
  • Intracellular Signaling Peptides and Proteins
  • Mannitol / pharmacology
  • Multiprotein Complexes / genetics
  • Multiprotein Complexes / metabolism
  • Nuclear Proteins / genetics*
  • Nuclear Proteins / metabolism
  • Phenotype
  • Plant Development / genetics
  • Protein Interaction Mapping
  • Sodium Chloride / pharmacology
  • Ubiquitin-Protein Ligases / genetics*
  • Ubiquitin-Protein Ligases / metabolism
  • Ultraviolet Rays

Substances

  • Anthocyanins
  • Arabidopsis Proteins
  • DDB1a protein, Arabidopsis
  • DDB1b protein, Arabidopsis
  • DET1 protein, Arabidopsis
  • DNA-Binding Proteins
  • Intracellular Signaling Peptides and Proteins
  • Multiprotein Complexes
  • Nuclear Proteins
  • Mannitol
  • Sodium Chloride
  • AT2G32950 protein, Arabidopsis
  • Ubiquitin-Protein Ligases