Crystal structure of wild-type and mutant human Ap4A hydrolase

Biochem Biophys Res Commun. 2013 Mar 1;432(1):16-21. doi: 10.1016/j.bbrc.2013.01.095. Epub 2013 Feb 4.

Abstract

Ap4A hydrolase (asymmetrical diadenosine tetraphosphate hydrolase, EC 3.6.1.17), an enzyme involved in a number of biological processes, is characterized as cleaving the polyphosphate chain at the fourth phosphate from the bound adenosine moiety. This paper presents the crystal structure of wild-type and E58A mutant human Ap4A hydrolase. Similar to the canonical Nudix fold, human Ap4A hydrolase shows the common αβα-sandwich architecture. Interestingly, two sulfate ions and one diphosphate coordinated with some conserved residues were observed in the active cleft, which affords a better understanding of a possible mode of substrate binding.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acid Anhydride Hydrolases / chemistry*
  • Acid Anhydride Hydrolases / genetics*
  • Amino Acid Sequence
  • Binding Sites
  • Crystallography, X-Ray
  • Diphosphates / chemistry
  • Humans
  • Molecular Sequence Data
  • Mutant Proteins / chemistry
  • Mutation
  • Phosphoric Monoester Hydrolases / chemistry*
  • Phosphoric Monoester Hydrolases / genetics*
  • Protein Structure, Secondary
  • Sulfuric Acid Esters / chemistry

Substances

  • Diphosphates
  • Mutant Proteins
  • Sulfuric Acid Esters
  • Phosphoric Monoester Hydrolases
  • Acid Anhydride Hydrolases
  • NUDT2 protein, human
  • bis(5'-nucleosyl)tetraphosphatase (asymmetrical)