Eukaryotic GPN-loop GTPases paralogs use a dimeric assembly reminiscent of archeal GPN

Cell Cycle. 2013 Feb 1;12(3):463-72. doi: 10.4161/cc.23367. Epub 2013 Jan 16.

Abstract

GTPases are molecular switches that regulate a wide-range of cellular processes. The GPN-loop GTPase (GPN) is a sub-family of P-loop NTPase that evolved from a single gene copy in archaea to triplicate paralog genes in eukaryotes, each having a non-redundant essential function in cell. In Saccharomyces cerevisiae, yGPN1 and yGPN2 are involved in sister chromatid cohesion mechanism, whereas nothing is known regarding yGPN3 function. Previous high-throughput experiments suggested that GPN paralogs interaction may occur. In this work, GPN|GPN contact was analyzed in details using TAP-Tag approach, yeast two-hybrid assay, in silico energy computation and site-directed mutagenesis of a conserved Glu residue located at the center of the interaction interface. It is demonstrated that this residue is essential for cell viability. A chromatid cohesion assay revealed that, like yGPN1 and yGPN2, yGPN3 also plays a role in sister chromatid cohesion. These results suggest that all three GPN proteins act at the molecular level in sister chromatid cohesion mechanism as a GPN|GPN complex reminiscent of the homodimeric structure of PAB0955, an archaeal member of GPN-loop GTPase.

Keywords: GPN-loop-GTPase; P-loop NTPase; chromatid cohesion; heterodimer; paralogous interactions.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cell Cycle Proteins
  • Chromatids / genetics
  • Chromatids / metabolism*
  • Chromosomal Proteins, Non-Histone
  • GTP Phosphohydrolases / metabolism*
  • GTP-Binding Proteins / metabolism*
  • Monomeric GTP-Binding Proteins / genetics
  • Monomeric GTP-Binding Proteins / metabolism*
  • Mutagenesis, Site-Directed
  • Protein Structure, Tertiary
  • Saccharomyces cerevisiae / genetics*
  • Saccharomyces cerevisiae Proteins / genetics
  • Saccharomyces cerevisiae Proteins / metabolism*
  • Transcription Factors / genetics
  • Transcription Factors / metabolism
  • Two-Hybrid System Techniques

Substances

  • Cell Cycle Proteins
  • Chromosomal Proteins, Non-Histone
  • Saccharomyces cerevisiae Proteins
  • Transcription Factors
  • GPN2 protein, S cerevisiae
  • GPN3 protein, S cerevisiae
  • GTP Phosphohydrolases
  • GTP-Binding Proteins
  • Npa3 protein, S cerevisiae
  • Monomeric GTP-Binding Proteins