Complete genome sequence and molecular characterization of thermostable Newcastle disease virus strain TS09-C

Virus Genes. 2013 Jun;46(3):542-5. doi: 10.1007/s11262-012-0871-1. Epub 2013 Jan 8.

Abstract

A thermostable avirulent Newcastle disease virus (NDV) strain TS09-C was developed by serial passage of V4 strain in BHK-21 cells. The complete genome sequence of strain TS09-C was determined and compared with the sequences of other NDV isolates representing different thermostable phenotypes. The TS09-C genome was 15,186 nucleotides long and consisted of eight genes in the order of 3'-NP-P/V/W-M-F-HN-L-5'. High levels of nucleotide and amino acid sequence identity existed among the thermostable NDV isolates. Thermostable strains TS09-C, V4, I-2, and Ulster all belonged to genotype I. The F protein cleavage site of strain TS09-C was (112)G-K-Q-R-R-L(117), with an isolated basic amino acid and a pair of contiguous basic amino acids, differing from that of its parental V4 strain ((112)G-K-Q-G-R-L(117)). Our characterization of the complete genome of thermostable avirulent NDV strain TS09-C may facilitate the development of a thermostable NDV reverse genetic system and further study of the mechanism of thermostability of NDV.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Cell Line
  • Cluster Analysis
  • Cricetinae
  • Genome, Viral*
  • Genotype
  • Molecular Sequence Data
  • Newcastle disease virus / genetics*
  • Newcastle disease virus / isolation & purification
  • RNA, Viral / genetics*
  • Sequence Analysis, DNA*
  • Serial Passage

Substances

  • RNA, Viral

Associated data

  • GENBANK/JX110635