Identification of a short region on chromosome 6 affecting direct calving ease in Piedmontese cattle breed

PLoS One. 2012;7(12):e50137. doi: 10.1371/journal.pone.0050137. Epub 2012 Dec 4.

Abstract

Calving in cattle is affected by calf morphology and by dam characteristics. It is described by two different traits: maternal calving ease, which is the ability to generate dams with good physiological predisposition to calving, and direct calving ease, which is the ability to generate calves that are easily born. The aim of this study was to identify regions of cattle genome harboring genes possibly affecting direct calving ease in the Piedmontese cattle breed. A population of 323 bulls scored for direct calving ease (EBV) was analyzed by a medium-density SNP marker panel (54,001 SNPs) to perform a genome-wide scan. The strongest signal was detected on chromosome 6 between 37.8 and 38.7 Mb where 13 SNPs associated to direct calving ease were found. Three genes are located in this region: LAP3, encoding for a leucine aminopeptidase involved in the oxytocin hydrolysis; NCAPG, encoding for a non-SMC condensin I complex, which has been associated in cattle with fetal growth and carcass size; and LCORL, which has been associated to height in humans and cattle. To further confirm the results of the genome-wide scan we genotyped additional SNPs within these genes and analyzed their association with direct calving ease. The results of this additional analysis fully confirmed the findings of the GWAS and particularly indicated LAP3 as the most probable gene involved. Linkage Disequilibrium (LD) analysis showed high correlation between SNPs located within LAP3 and LCORL indicating a possible selection signature due either to increased fitness or breeders' selection for the trait.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Breeding*
  • Cattle / genetics*
  • Chromosome Mapping / veterinary*
  • Female
  • Polymorphism, Single Nucleotide
  • Pregnancy

Grants and funding

This work has been supported by the SelMol project (http://www.selmol.eu/) financed by Ministero delle politiche agricole alimentari e forestali and by the CASPUR standard HPC grant 2010 “Utilizzo di panel da 54 k SNPs per identificare regioni cromosomiche ad alta differenziazione intraspecifica o sotto selezione per la scoperta di geni implicati nella variazione fenotipica.” GM PhD fellowship was granted by CASPUR. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.