Site-selective azide incorporation into endogenous RNase A via a "chemistry" approach

Org Biomol Chem. 2013 Jan 14;11(2):353-61. doi: 10.1039/c2ob26561c. Epub 2012 Nov 22.

Abstract

Site-selective labeling of endogenous proteins represents a major challenge in chemical biology, mainly due to the absence of unique reactive groups that can be addressed selectively. Recently, we have shown that surface-exposed lysine residues of two endogenous proteins and a peptide exhibit subtle changes in their individual reactivities. This feature allows the modification of a single residue in a highly site-selective fashion if kinetically controlled labeling conditions are applied. In order to broaden the scope of the "kinetically-controlled protein labeling" (KPL) approach and highlight additional applications, the water-soluble bioorthogonal reagent, biotin-TEO-azido-NHS (11), is developed which enables the site-selective introduction of an azido group onto endogenous proteins/peptides. This bioconjugation reagent features a biotin tag for affinity purification, an azido group for bioorthogonal labeling, a TEO (tetraethylene oxide) linker acting as a spacer and to impart water solubility and an N-hydroxysuccinimidyl (NHS) ester group for reacting with the exposed lysine residue. As a proof of concept, the native protein ribonuclease A (RNase A) bearing ten available lysine residues at the surface is furnished with a single azido group at Lys 1 in a highly site-selective fashion yielding azido-(K1)RNase A. The K1 site-selectivity is demonstrated by the combined application and interpretation of high resolution MALDI-ToF mass spectroscopy, tandem mass spectroscopy and extracted ion chromatography (XIC). Finally, the water soluble azide-reactive phosphine probe, rho-TEO-phosphine (21) (rho: rhodamine), has been designed and applied to attach a chromophore to azido-(K1)RNase A via Staudinger ligation at physiological pH indicating that the introduced azido group is accessible and could be addressed by other established azide-reactive bioorthogonal reaction schemes.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Azides / metabolism*
  • Biotin / chemical synthesis
  • Biotin / chemistry
  • Chemistry, Organic / methods*
  • Crystallography, X-Ray
  • Ethylene Oxide / chemical synthesis
  • Ethylene Oxide / chemistry
  • Kinetics
  • Molecular Sequence Data
  • Phosphines / chemical synthesis
  • Phosphines / chemistry
  • Rhodamines / chemical synthesis
  • Rhodamines / chemistry
  • Ribonuclease, Pancreatic / chemistry
  • Ribonuclease, Pancreatic / metabolism*
  • Solubility
  • Succinimides / chemical synthesis
  • Succinimides / chemistry
  • Water / chemistry

Substances

  • Azides
  • Phosphines
  • Rhodamines
  • Succinimides
  • Water
  • Biotin
  • Ribonuclease, Pancreatic
  • phosphine
  • Ethylene Oxide
  • rhodamine B