Design, modification and 3D QSAR studies of novel 2,3-dihydrobenzo[b][1,4]dioxin-containing 4,5-dihydro-1H-pyrazole derivatives as inhibitors of B-Raf kinase

Bioorg Med Chem. 2012 Oct 15;20(20):6048-58. doi: 10.1016/j.bmc.2012.08.043. Epub 2012 Aug 30.

Abstract

Two series of novel 2,3-dihydrobenzo[b][1,4]dioxin-containing 4,5-dihydro-1H-pyrazole derivatives C1-C15 and D1-D15 have been synthesized and evaluated for their B-Raf inhibitory and anti-proliferation activities. Compound C14 ((3-(4-bromophenyl)-5-(2-fluorophenyl)-4,5-dihydro-1H-pyrazol-1-yl)(2,3-dihydrobenzo[b][1,4]dioxin-6-yl)methanone) showed the most potent biological activity against B-Raf(V600E) (IC(50) = 0.11 μM) and WM266.4 human melanoma cell line (GI(50) = 0.58 μM), being comparable with the positive control Erlotinib and more potent than our previous best compound, while D10 ((2,3-dihydrobenzo[b][1,4]dioxin-2-yl)(5-(3-fluorophenyl)-3-phenyl-4,5-dihydro-1H-pyrazol-1-yl)methanone) performed the best in the D series (IC(50) = 1.70 μM; GI(50) = 1.45 μM). The docking simulation was performed to analyze the probable binding models and poses and the QSAR model was built for reasonable design of B-Raf inhibitors in future. The introduction of 2,3-dihydrobenzo[b][1,4]dioxin structure reinforced the combination of our compounds and the receptor, resulting in progress of bioactivity.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Binding Sites
  • Cell Line, Tumor
  • Cell Proliferation / drug effects
  • Dioxanes / chemical synthesis
  • Dioxanes / chemistry*
  • Dioxanes / pharmacology
  • Dioxins / chemistry*
  • Drug Design*
  • Erlotinib Hydrochloride
  • Humans
  • Molecular Docking Simulation
  • Protein Kinase Inhibitors / chemical synthesis
  • Protein Kinase Inhibitors / chemistry*
  • Protein Kinase Inhibitors / pharmacology
  • Protein Structure, Tertiary
  • Proto-Oncogene Proteins B-raf / antagonists & inhibitors*
  • Proto-Oncogene Proteins B-raf / metabolism
  • Pyrazoles / chemical synthesis
  • Pyrazoles / chemistry*
  • Pyrazoles / pharmacology
  • Quantitative Structure-Activity Relationship*
  • Quinazolines / pharmacology
  • Thermodynamics

Substances

  • (2,3-dihydrobenzo(b)(1,4)dioxin-2-yl)(5-(3-fluorophenyl)-3-phenyl-4,5-dihydro-1H-pyrazol-1-yl)methanone
  • 2,3-dihydrobenzo(1,4)dioxin
  • Dioxanes
  • Dioxins
  • Protein Kinase Inhibitors
  • Pyrazoles
  • Quinazolines
  • pyrazole
  • Erlotinib Hydrochloride
  • Proto-Oncogene Proteins B-raf