Evidence for a dual role of an active site histidine in α-amino-β-carboxymuconate-ε-semialdehyde decarboxylase

Biochemistry. 2012 Jul 24;51(29):5811-21. doi: 10.1021/bi300635b. Epub 2012 Jul 12.

Abstract

The previously reported crystal structures of α-amino-β-carboxymuconate-ε-semialdehyde decarboxylase (ACMSD) show a five-coordinate Zn(II)(His)(3)(Asp)(OH(2)) active site. The water ligand is H-bonded to a conserved His228 residue adjacent to the metal center in ACMSD from Pseudomonas fluorescens (PfACMSD). Site-directed mutagenesis of His228 to tyrosine and glycine in this study results in a complete or significant loss of activity. Metal analysis shows that H228Y and H228G contain iron rather than zinc, indicating that this residue plays a role in the metal selectivity of the protein. As-isolated H228Y displays a blue color, which is not seen in wild-type ACMSD. Quinone staining and resonance Raman analyses indicate that the blue color originates from Fe(III)-tyrosinate ligand-to-metal charge transfer. Co(II)-substituted H228Y ACMSD is brown in color and exhibits an electron paramagnetic resonance spectrum showing a high-spin Co(II) center with a well-resolved (59)Co (I = 7/2) eight-line hyperfine splitting pattern. The X-ray crystal structures of as-isolated Fe-H228Y (2.8 Å) and Co-substituted (2.4 Å) and Zn-substituted H228Y (2.0 Å resolution) support the spectroscopic assignment of metal ligation of the Tyr228 residue. The crystal structure of Zn-H228G (2.6 Å) was also determined. These four structures show that the water ligand present in WT Zn-ACMSD is either missing (Fe-H228Y, Co-H228Y, and Zn-H228G) or disrupted (Zn-H228Y) in response to the His228 mutation. Together, these results highlight the importance of His228 for PfACMSD's metal specificity as well as maintaining a water molecule as a ligand of the metal center. His228 is thus proposed to play a role in activating the metal-bound water ligand for subsequent nucleophilic attack on the substrate.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Carboxy-Lyases / chemistry
  • Carboxy-Lyases / genetics*
  • Carboxy-Lyases / metabolism*
  • Catalytic Domain
  • Crystallography, X-Ray
  • Dihydroxyphenylalanine / metabolism
  • Ferric Compounds / chemistry
  • Ferric Compounds / metabolism
  • Histidine / chemistry
  • Histidine / genetics*
  • Histidine / metabolism*
  • Metals / metabolism
  • Models, Molecular
  • Mutagenesis, Site-Directed
  • Point Mutation
  • Pseudomonas fluorescens / chemistry
  • Pseudomonas fluorescens / enzymology*
  • Pseudomonas fluorescens / genetics*
  • Substrate Specificity

Substances

  • Ferric Compounds
  • Metals
  • Histidine
  • Dihydroxyphenylalanine
  • Carboxy-Lyases
  • aminocarboxymuconate-semialdehyde decarboxylase