The iron concentration in groundwater, iron's seasonal migration from groundwater to sun-basked pools, paddy fields and drainage canals, and its distribution in the sediments/soils were observed in the Jiansanjiang Branch Bureau, Heilongjiang Agricultural Cultivation Bureau. The results suggested that the total iron mass concentration of the studied area was (1.73 +/- 0.41) mg x L(-1), ranging from 0.01 to 11.4 mg x L(-1), with the variation coefficient of 1.29%. The annual iron input mass from groundwater to paddy fields and other surface water bodies was 4 976.40 t in 2010, according to the rice planting area and rating irrigation volume. Dissolved Fe2+, Fe3+ and iron, as well as the total iron (dissolved and particle) had seasonal variation, with greater values presented in June and July. These waterborne irons in paddy field waters were greater than those in sun-basked pools and drainage canals. Obvious enrichment effect was observed in sun-basked pools and paddy fields, with their total iron mass concentrations were 6.17 and 21.65 times greater than that in groundwater. Either the total iron or iron oxides in sun-baked pool sediments were greater than that in paddy field soils, field canal and main canal sediments. The differences of the total iron and iron oxides in paddy field soils, field canal and main canal sediments were not significantly different. Considerable irons were precipitated within sun-basked pools and paddy fields during the transfer from groundwater to surface water, with a part of irons exporting into canals through drainage and then precipitated there. Not only the change of total iron mass, but the transformation of iron chemical speciation was observed during the transfer, which was affected by paddy irrigation management directly. The long-term irrigation pumping could cause the substantial enrichment of iron in paddy soils and canal sediments, resulting in the increase of potential pollution risk.