Isolation and characterization of 3-nitrophenol-degrading bacteria associated with rhizosphere of Spirodela polyrrhiza

Environ Sci Pollut Res Int. 2012 Jun;19(5):1852-8. doi: 10.1007/s11356-012-0836-x. Epub 2012 Mar 7.

Abstract

Introduction: The accelerated biodegradation of 3-nitrophenol (3-NP) in the rhizosphere of giant duckweed (Spirodela polyrrhiza) was investigated.

Materials and methods: Biodegradation of 3-nitrophenol in the rhizosphere of a floating aquatic plant, S. polyrrhiza, was investigated by using three river water samples supplemented with 10 mg l(-1) of 3-NP. Isolation and enrichment culture of 3-NP-degrading bacteria were performed in basal salts medium containing 3-NP (50 mg l(-1)). The isolated strains were physiologically and phylogenetically characterized by using an API20NE kit and 16S rRNA gene sequencing.

Results and discussion: Accelerated removal of 3-NP (100%) was observed in river water samples with S. polyrrhiza compared with their removal in plant-free river water. Also, 3-NP persisted in an autoclaved solution with aseptic plants, suggesting that the accelerated 3-NP removal resulted largely from degradation by bacteria inhabiting the plant rather than from adsorption and uptake by the plant. We successfully isolated six and four strains of 3-NP-degrading bacteria from the roots of S. polyrrhiza and plant-free river water, respectively. Phylogenetic analysis based on 16S rRNA gene divided the 3-NP-degrading bacteria into two taxonomic groups: the genera Pseudomonas and Cupriavidus. The strains belonging to the genus Cupriavidus were only isolated from the roots of duckweed. All strains isolated from the roots utilized 3-NP (0.5 mM) as a sole carbon and energy source, indicating that they could have contributed to the accelerated degradation of 3-NP in the rhizosphere of S. polyrrhiza.

Conclusions: The rhizoremediation using S. polyrrhiza and its rhizosphere bacteria can be an effective strategy for cleaning up the 3-NP-contaminated surface waters.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Araceae / microbiology*
  • Biodegradation, Environmental
  • Cupriavidus / genetics
  • Cupriavidus / isolation & purification
  • Cupriavidus / metabolism*
  • Fresh Water
  • Molecular Sequence Data
  • Nitrophenols / metabolism*
  • Nitrophenols / pharmacokinetics
  • Phylogeny
  • Pseudomonas / genetics
  • Pseudomonas / isolation & purification
  • Pseudomonas / metabolism*
  • RNA, Ribosomal, 16S
  • Rhizosphere*
  • Rivers

Substances

  • Nitrophenols
  • RNA, Ribosomal, 16S
  • 3-nitrophenol

Associated data

  • GENBANK/AB671553
  • GENBANK/AB671554
  • GENBANK/AB671555
  • GENBANK/AB671556
  • GENBANK/AB671557
  • GENBANK/AB671558
  • GENBANK/AB671559
  • GENBANK/AB671560
  • GENBANK/AB671561