Detection of anammox activity and 16S rRNA genes in ravine paddy field soil

Microbes Environ. 2012;27(3):316-9. doi: 10.1264/jsme2.me11330. Epub 2012 Feb 22.

Abstract

An anammox assay involving a ¹⁵N tracer and gas chromatography-mass spectrometry revealed that the potential anammox activity accounted for 1 to 5% of total N₂ production in a ravine paddy field, Japan. Among four 4-cm-deep layers, the top layer showed the highest activity. Clone libraries showed that the DNA in the top layer contained sequences related to those of Candidatus 'Brocadia fulgida', Ca. 'B. anammoxidans', and Ca. 'Kuenenia stuttgartiensis'. These results suggest that a specific population of anammox bacteria was present in paddy soils, although a small part of dinitrogen gas was emitted from the soil via anammox.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Ammonia / metabolism*
  • Bacteria / classification*
  • Bacteria / genetics
  • Bacteria / metabolism*
  • Biodiversity*
  • Cluster Analysis
  • DNA, Bacterial / chemistry
  • DNA, Bacterial / genetics
  • DNA, Ribosomal / chemistry
  • DNA, Ribosomal / genetics
  • Gas Chromatography-Mass Spectrometry
  • Isotope Labeling
  • Japan
  • Metagenome*
  • Nitrogen Isotopes
  • Oxidation-Reduction
  • Phylogeny
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Soil Microbiology*

Substances

  • DNA, Bacterial
  • DNA, Ribosomal
  • Nitrogen Isotopes
  • RNA, Ribosomal, 16S
  • Ammonia