Identifying and studying ubiquitin receptors by NMR

Methods Mol Biol. 2012:832:279-303. doi: 10.1007/978-1-61779-474-2_20.

Abstract

Ubiquitin and ubiquitin chains are recognized by a large and growing family of receptor proteins. NMR spectroscopy provides a powerful means to evaluate whether and how a protein binds to ubiquitin. It can be used to measure binding affinities, to map interaction surfaces, and to solve the three-dimensional structure of ubiquitin:receptor complexes. Herein, we describe three NMR techniques of varying complexity that are valuable tools to characterize protein:protein complexes. These include heteronuclear correlation experiments, paramagnetic relaxation enhancement (PRE) experiments via spin labeling, and techniques designed to obtain intermolecular dipole-dipole interactions by nuclear Overhauser effects (NOEs).

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Models, Molecular
  • Nuclear Magnetic Resonance, Biomolecular / methods*
  • Protein Binding*
  • Protein Interaction Domains and Motifs
  • Proteins / chemistry
  • Spin Labels
  • Ubiquitin / chemistry*
  • Ubiquitin / metabolism
  • Ubiquitination

Substances

  • Proteins
  • Spin Labels
  • Ubiquitin