Real-time PCR machine system modeling and a systematic approach for the robust design of a real-time PCR-on-a-chip system

Sensors (Basel). 2010;10(1):697-718. doi: 10.3390/s100100697. Epub 2010 Jan 19.

Abstract

Chip-based DNA quantification systems are widespread, and used in many point-of-care applications. However, instruments for such applications may not be maintained or calibrated regularly. Since machine reliability is a key issue for normal operation, this study presents a system model of the real-time Polymerase Chain Reaction (PCR) machine to analyze the instrument design through numerical experiments. Based on model analysis, a systematic approach was developed to lower the variation of DNA quantification and achieve a robust design for a real-time PCR-on-a-chip system. Accelerated lift testing was adopted to evaluate the reliability of the chip prototype. According to the life test plan, this proposed real-time PCR-on-a-chip system was simulated to work continuously for over three years with similar reproducibility in DNA quantification. This not only shows the robustness of the lab-on-a-chip system, but also verifies the effectiveness of our systematic method for achieving a robust design.

Keywords: DNA quantification reliability; real-time PCR machine; real-time PCR on-a-chip; robust design; system identification model.

MeSH terms

  • Computer Systems
  • Computer-Aided Design*
  • DNA / analysis*
  • DNA / genetics*
  • Equipment Design
  • Equipment Failure Analysis
  • Oligonucleotide Array Sequence Analysis / instrumentation*
  • Real-Time Polymerase Chain Reaction / instrumentation*

Substances

  • DNA