Design and synthesis of trans-3-aminopyran-2-carboxylic acid (APyC) and α/β-peptides with 9/11-helix

Org Biomol Chem. 2011 Dec 7;9(23):8102-11. doi: 10.1039/c1ob06279d. Epub 2011 Oct 19.

Abstract

A new β-amino acid, trans-3-aminopyran-2-carboxylic acid (APyC), was designed and synthesized from (R)-glyceraldehyde derivative and used in the synthesis of α/β-peptides in a 1 : 1 alternating pattern with d-Ala. The presence of oxygen atom at the Cβ(2)-position in APyC was envisaged to provide opportunity for additional interaction. These hybrid peptides have shown the presence of 9/11-helix through extensive NMR and MD studies. The amide protons of d-Ala, in addition to participating in 9-mr H-bonding with CO of succeeding β-residue, were also involved in additional electrostatic interaction with pyran ring oxygen of preceding β-residue, which facilitated further stabilization to the 9/11-mixed helix. The study thus results in a new 'motif' for a 9/11-helix, and the first example from a cyclic β-amino acid.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acids / chemical synthesis
  • Carboxylic Acids / chemical synthesis*
  • Models, Molecular
  • Peptides / chemical synthesis*
  • Protein Structure, Secondary
  • Pyrans / chemical synthesis*
  • Static Electricity

Substances

  • 3-aminopyran-2-carboxylic acid
  • Amino Acids
  • Carboxylic Acids
  • Peptides
  • Pyrans