Molecular characterization of the RNA-dependent RNA polymerase from groundnut ringspot virus (genus Tospovirus, family Bunyaviridae)

Arch Virol. 2011 Aug;156(8):1425-9. doi: 10.1007/s00705-011-0973-4. Epub 2011 Mar 26.

Abstract

Groundnut ringspot virus is a negative-sense single-stranded RNA virus that belongs to the genus Tospovirus and is the prevalent member of this genus in Brazil. This work presents the nucleotide sequence of the L RNA, with a single open reading frame of 2873 amino acids in the complementary strand corresponding to the RNA-dependent RNA polymerase (L protein), as well as the characterization of conserved domains of the L protein by in silico analysis. Phylogenetic analysis of different L protein domains confirmed that GRSV is a member of the American clade, and comparison with a N-protein indicates that phylogeny based on L protein sequences may be more reliable than that based on the N protein.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Gene Expression Regulation, Enzymologic
  • Gene Expression Regulation, Viral / physiology
  • Phylogeny
  • RNA, Viral / genetics
  • RNA-Dependent RNA Polymerase / chemistry*
  • RNA-Dependent RNA Polymerase / genetics
  • RNA-Dependent RNA Polymerase / metabolism*
  • Tospovirus / enzymology*
  • Viral Proteins / genetics
  • Viral Proteins / metabolism

Substances

  • RNA, Viral
  • Viral Proteins
  • RNA-Dependent RNA Polymerase