In vitro and in vivo cleavage of HIV-1 RNA by new SOFA-HDV ribozymes and their potential to inhibit viral replication

RNA Biol. 2011 Mar-Apr;8(2):343-53. doi: 10.4161/rna.8.2.15200. Epub 2011 Mar 1.

Abstract

RNA-based compounds are promising agents to inactivate viruses. New specific hepatitis delta virus (HDV)-derived ribozymes are natural molecules that can be engineered to specifically target a viral RNA. We have designed specific on-off adaptor (SOFA)-HDV ribozymes targeting the tat and rev sequences of the human immunodeficiency virus type 1 (HIV-1) RNA. We show that the SOFA-HDV ribozymes cleave their RNA target in vitro. They inhibit the Tat-mediated transactivation of HIV-1 from 62% to 86% in different assays. In vivo, the amount of HIV RNA was decreased by 60 and 86% with two distinct ribozymes, which indicates that the inhibition of HIV production is directly correlated to the decline in spliced and unspliced viral RNAs. These SOFAHDV- ribozymes inhibited the expression and the viral production of four HIV-1 strains, indicating an extended potential to act on multiple HIV variants. In HEK 293T and HeLa cells transfected with pNL4-3 and the SOFA-HDV-ribozymes, the reduced RNA levels consequently decreased the Gag protein expression in the cell and virus production in the supernatant. When transfected before HIV-1 infection, the ribozymes prevented the incoming virus from being expressed. The ribozymes inhibited HIV production up to 90% when transfected in combination with the HIV protease inhibitor Atazanavir. Our results strongly suggest that SOFA-HDV ribozymes have a great potential to target HIV-1 and to be used as therapeutic agents in combination therapy.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Atazanavir Sulfate
  • Base Sequence
  • Gene Products, gag / biosynthesis
  • Gene Products, gag / genetics
  • Gene Products, rev / genetics
  • Gene Products, rev / metabolism
  • HEK293 Cells
  • HIV Infections / genetics
  • HIV-1 / enzymology*
  • HIV-1 / genetics
  • HeLa Cells
  • Hepatitis Delta Virus / enzymology
  • Hepatitis Delta Virus / genetics
  • Humans
  • Oligopeptides / pharmacology
  • Pyridines / pharmacology
  • RNA Splicing
  • RNA, Catalytic / genetics
  • RNA, Catalytic / metabolism*
  • RNA, Viral / genetics*
  • RNA, Viral / metabolism*
  • Virus Replication*
  • tat Gene Products, Human Immunodeficiency Virus / genetics
  • tat Gene Products, Human Immunodeficiency Virus / metabolism

Substances

  • Gene Products, gag
  • Gene Products, rev
  • Oligopeptides
  • Pyridines
  • RNA, Catalytic
  • RNA, Viral
  • tat Gene Products, Human Immunodeficiency Virus
  • Atazanavir Sulfate