Coding region: the neglected post-transcriptional code

RNA Biol. 2011 Jan-Feb;8(1):44-8. doi: 10.4161/rna.8.1.13863. Epub 2011 Jan 1.

Abstract

The control of mammalian mRNA turnover and translation has been linked almost exclusively to specific cis-elements within the 5'- and 3'-untranslated regions (UTRs) of the mature mRNA. However, instances of regulated turnover and translation via cis-elements within the coding region (CR) of mRNAs are accumulating. Here, we describe the regulation of post-transcriptional fate through trans-binding factors (RNA-binding proteins and microRNAs) that function via CR sequences. We discuss how the CR enriches the post-transcriptional control of gene expression, and predict that new high-throughput technologies will enable a more mainstream study of CR-governed gene regulation.

Publication types

  • Research Support, N.I.H., Intramural
  • Review

MeSH terms

  • Fragile X Mental Retardation Protein / metabolism
  • Gene Expression Regulation
  • MicroRNAs / metabolism*
  • Open Reading Frames*
  • RNA Processing, Post-Transcriptional*
  • RNA Stability
  • RNA-Binding Proteins / metabolism
  • RNA-Induced Silencing Complex / metabolism
  • Ribosomes / genetics
  • Ribosomes / metabolism
  • Untranslated Regions*

Substances

  • FMR1 protein, human
  • MicroRNAs
  • RNA-Binding Proteins
  • RNA-Induced Silencing Complex
  • Untranslated Regions
  • Fragile X Mental Retardation Protein