Crystallization and preliminary X-ray crystallographic analysis of the NmrA-like DDB_G0286605 protein from the social amoeba Dictyostelium discoideum

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Jan 1;67(Pt 1):94-7. doi: 10.1107/S1744309110046580. Epub 2010 Dec 23.

Abstract

The DDB_G0286605 gene product from Dictyostelium discoideum, an NmrA-like protein that belongs to the short-chain dehydrogenase/reductase family, has been crystallized by the hanging-drop vapour-diffusion method at 295 K. A 1.64 Å resolution data set was collected using synchrotron radiation. The DDB_G0286605 protein crystals belonged to space group P2(1), with unit-cell parameters a=67.598, b=54.935, c=84.219 Å, β = 109.620°. Assuming the presence of two molecules in the asymmetric unit, the solvent content was estimated to be about 43.25% with 99% probability. Molecular-replacement trials were attempted with three NmrA-like proteins, NmrA, HSCARG and QOR2, as search models, but failed. This may be a consequence of the low sequence identity between the DDB_G0286605 protein and the search models (DDB_G0286605 has a primary-sequence identity of 28, 32 and 19% to NmrA, HCARG and QOR2, respectively).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Crystallization
  • Crystallography, X-Ray
  • Dictyostelium / enzymology*
  • Fungal Proteins / chemistry
  • Fungal Proteins / genetics
  • Humans
  • Molecular Sequence Data
  • Protozoan Proteins / chemistry*
  • Protozoan Proteins / genetics
  • Repressor Proteins / chemistry
  • Repressor Proteins / genetics
  • Sequence Alignment
  • Transcription Factors / chemistry
  • Transcription Factors / genetics
  • X-Ray Diffraction

Substances

  • Fungal Proteins
  • NMRAL1 protein, human
  • NmrA protein, Aspergillus nidulans
  • Protozoan Proteins
  • Repressor Proteins
  • Transcription Factors