Distribution of human rotavirus G and P genotypes in a hospital setting from Northern India

Southeast Asian J Trop Med Public Health. 2010 Sep;41(5):1145-52.

Abstract

Rotavirus gastroenteritis is a major cause of severe dehydrating diarrhea in children worldwide. Rotavirus G and P genotyping is essential for epidemiological surveillance and for better formulation of candidate rotavirus vaccines. Out of 862 diarrheal stool samples collected from hospitalized children aged < 2 years during February 2005 - March 2007, 318 (36.9%) were positive for rotavirus by ELISA. G and P genotyping was performed on 100 randomly selected positive samples using a seminested multiplex RT-PCR assay. The result of G genotyping indicates G1 (60%) was the most predominant VP7 type, followed by G2 (16%), G9 (8%) and G3 (3%). Two cases of G12 genotype were also observed. P genotypes identified were P[8] (40%) followed by P[4] (26%) and P[6] (17%). The most common G-P combinations were G1P[8] (26%), followed by G1P[4] and G1P[6]. Mixed infection involved 28% of strains. In this study the G1 and P[8] genotypes were the leading G and P types. Two cases with G12 genotype were also observed during the study.

MeSH terms

  • Electrophoresis, Agar Gel
  • Enzyme-Linked Immunosorbent Assay
  • Feces / virology
  • Female
  • Genotype
  • Hospitals
  • Humans
  • India / epidemiology
  • Infant
  • Male
  • Reverse Transcriptase Polymerase Chain Reaction
  • Rotavirus / genetics*
  • Rotavirus Infections / epidemiology
  • Rotavirus Infections / genetics*
  • Rotavirus Infections / virology*