Assembly of a functional Machupo virus polymerase complex

Proc Natl Acad Sci U S A. 2010 Nov 16;107(46):20069-74. doi: 10.1073/pnas.1007152107. Epub 2010 Oct 26.

Abstract

Segmented negative-sense viruses of the family Arenaviridae encode a large polymerase (L) protein that contains all of the enzymatic activities required for RNA synthesis. These activities include an RNA-dependent RNA polymerase (RdRP) and an RNA endonuclease that cleaves capped primers from cellular mRNAs to prime transcription. Using purified catalytically active Machupo virus L, we provide a view of the overall architecture of this multifunctional polymerase and reconstitute complex formation with an RNA template in vitro. The L protein contains a central ring domain that is similar in appearance to the RdRP of dsRNA viruses and multiple accessory appendages that may be responsible for 5' cap formation. RNA template recognition by L requires a sequence-specific motif located at positions 2-5 in the 3' terminus of the viral genome. Moreover, L-RNA complex formation depends on single-stranded RNA, indicating that inter-termini dsRNA interactions must be partially broken for complex assembly to occur. Our results provide a model for arenavirus polymerase-template interactions and reveal the structural organization of a negative-strand RNA virus L protein.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Arenaviruses, New World / enzymology*
  • Base Sequence
  • Biocatalysis
  • Microscopy, Electron
  • Models, Molecular
  • Molecular Sequence Data
  • Protein Binding
  • RNA, Viral / genetics
  • RNA-Dependent RNA Polymerase / isolation & purification
  • RNA-Dependent RNA Polymerase / metabolism*
  • RNA-Dependent RNA Polymerase / ultrastructure
  • Templates, Genetic
  • Viral Proteins / isolation & purification
  • Viral Proteins / ultrastructure

Substances

  • RNA, Viral
  • Viral Proteins
  • RNA-Dependent RNA Polymerase