The core-independent promoter-specific interaction of primary sigma factor

Nucleic Acids Res. 2011 Feb;39(3):913-25. doi: 10.1093/nar/gkq911. Epub 2010 Oct 8.

Abstract

Previous studies have led to a model in which the promoter-specific recognition of prokaryotic transcription initiation factor, sigma (σ), is core dependent. Most σ functions were studied on the basis of this tenet. Here, we provide in vitro evidence demonstrating that the intact Bacillus subtilis primary sigma, σ(A), by itself, is able to interact specifically with promoter deoxyribonucleic acid (DNA), albeit with low sequence selectivity. The core-independent promoter-specific interaction of the σ(A) is -10 specific. However, the promoter -10 specific interaction is unable to allow the σ(A) to discern the optimal promoter spacing. To fulfill this goal, the σ(A) requires assistance from core RNA polymerase (RNAP). The ability of σ, by itself, to interact specifically with promoter might introduce a critical new dimension of study in prokaryotic σ function.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacillus subtilis
  • Bacterial Proteins / isolation & purification
  • Bacterial Proteins / metabolism*
  • Base Sequence
  • Binding Sites
  • DNA / chemistry
  • DNA-Binding Proteins / isolation & purification
  • DNA-Binding Proteins / metabolism
  • Promoter Regions, Genetic*
  • Protein Binding
  • Sigma Factor / isolation & purification
  • Sigma Factor / metabolism*

Substances

  • Bacterial Proteins
  • DNA-Binding Proteins
  • Sigma Factor
  • DNA