Noncanonical cytoplasmic processing of viral microRNAs

RNA. 2010 Nov;16(11):2068-74. doi: 10.1261/rna.2303610. Epub 2010 Sep 14.

Abstract

Cellular utilization of RNA interference (RNAi) as a mechanism to combat virus infection is thought to be restricted to plants and invertebrates. In vertebrates, antiviral defenses are largely dependent on interferons (IFNs), with the use of small RNAs restricted to microRNA (miRNA)-mediated targeting of host transcripts. Here we demonstrate that incorporation of a primary miRNA into a cytoplasmic virus results in the formation of a Dicer-dependent, DGCR8-independent, mature miRNA capable of conferring RNAi-like activity. Processing of the viral mirtron-like product (virtron) is indistinguishable from endogenous miRNA maturation and elicits post-transcriptional gene silencing, albeit at a reduced level. Furthermore, virtrons impose Dicer-dependent, microprocessor-independent, and IFN-independent interference on virus replication in a sequence-specific manner. Taken together, these results suggest the existence of a noncanonical, small-RNA-based activity capable of processing cytoplasmic hairpins and perhaps contributing to the cell's antiviral arsenal.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Animals
  • Base Sequence
  • Cell Line
  • Cytoplasm / chemistry
  • Cytoplasm / genetics*
  • Cytoplasm / metabolism
  • DEAD-box RNA Helicases / deficiency
  • DEAD-box RNA Helicases / metabolism
  • Endoribonucleases / deficiency
  • Endoribonucleases / metabolism
  • Humans
  • Mice
  • Mice, Knockout
  • MicroRNAs / chemistry
  • MicroRNAs / genetics*
  • MicroRNAs / metabolism
  • Molecular Sequence Data
  • Nucleic Acid Conformation
  • Ribonuclease III
  • Sindbis Virus / genetics*
  • Sindbis Virus / metabolism
  • Virus Replication

Substances

  • MicroRNAs
  • Endoribonucleases
  • Dicer1 protein, mouse
  • Ribonuclease III
  • DEAD-box RNA Helicases

Grants and funding