Stabilizing capping motif for beta-hairpins and sheets

Proc Natl Acad Sci U S A. 2010 Jun 8;107(23):10466-71. doi: 10.1073/pnas.0913534107. Epub 2010 May 19.

Abstract

Although much has been learned about the design of models of beta-sheets during the last decade, modest fold stabilities in water and terminal fraying remain a feature of most beta-hairpin peptides. In the case of hairpin capping, nature did not provide guidance for solving the problem. Some observations from prior turn capping designs, with further optimization, have provided a generally applicable, "unnatural" beta cap motif (alkanoyl-Trp at the N terminus and Trp-Thr-Gly at the C terminus) that provides a net contribution of 6 + kJ/mol to beta-hairpin stability, surpassing all other interactions that stabilize beta-hairpins including the covalent disulfide bond. The motif, made up entirely of natural residues, is specific to the termini of antiparallel beta-strands and reduces fraying at the ends of hairpins and other beta-sheet models. Utilizing this motif, 10- to 22-residue peptide scaffolds of defined stereochemistry that are greater than 98% folded in water have been prepared. The beta-cap can also be used to staple together short antiparallel beta-strands connected by a long flexible loop.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Acetylation
  • Amino Acid Sequence
  • Circular Dichroism
  • Models, Molecular
  • Nuclear Magnetic Resonance, Biomolecular
  • Protein Folding
  • Protein Stability
  • Protein Structure, Secondary
  • Proteins / chemistry*
  • Proteins / metabolism

Substances

  • Proteins