Evidence that the polymerase of respiratory syncytial virus initiates RNA replication in a nontemplated fashion

Proc Natl Acad Sci U S A. 2010 Jun 1;107(22):10226-31. doi: 10.1073/pnas.0913065107. Epub 2010 May 17.

Abstract

RNA virus polymerases must initiate replicative RNA synthesis with extremely high accuracy to maintain their genome termini and to avoid generating defective genomes. For the single-stranded negative-sense RNA viruses, it is not known how this accuracy is achieved. To investigate this question, mutations were introduced into the 3' terminal base of a respiratory syncytial virus (RSV) template, and the RNA products were examined to determine the impact of the mutation. To perform the assay, RNA replication was reconstituted using a modified minireplicon system in which replication was limited to a single step. Importantly, this system allowed analysis of RSV RNA generated intracellularly, but from a defined template that was not subject to selection by replication. Sequence analysis of RNA products generated from templates containing 1U-C and 1U-A substitutions showed that, in both cases, replication products were initiated with a nontemplated, WT A residue, rather than a templated G or U residue, indicating that the polymerase selects the terminal NTP independently of the template. Examination of a template in which the position 1 nucleotide was deleted supported these findings. This mutant directed efficient replication at approximately 60% of WT levels, and its product was found to be initiated at the WT position (-1 relative to the template) with a WT A residue. These findings show that the RSV replicase selects ATP and initiates at the correct position, independently of the first nucleotide of the template, suggesting a mechanism by which highly accurate replication initiation is achieved.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Cell Line
  • Genome, Viral
  • Humans
  • Mutagenesis
  • Mutation
  • Plasmids / genetics
  • Promoter Regions, Genetic
  • RNA, Viral / biosynthesis*
  • RNA, Viral / genetics*
  • RNA-Dependent RNA Polymerase / metabolism*
  • Replicon
  • Respiratory Syncytial Viruses / genetics*
  • Respiratory Syncytial Viruses / physiology*
  • Virus Replication / genetics
  • Virus Replication / physiology

Substances

  • RNA, Viral
  • RNA-Dependent RNA Polymerase