Recognition of single stranded and double stranded DNA/RNA sequences in aqueous medium by small bis-aromatic derivatives

Mini Rev Med Chem. 2010 Apr;10(4):299-308. doi: 10.2174/138955710791330990.

Abstract

The aim of this review is to summarize the most comprehensive results in the field of bis-aromatic compounds targeting DNA and RNA, whereby both aromatic units of small molecule bind to the polynucleotide by the aromatic stacking interactions. The most recent results about structure - DNA/RNA binding affinity, selectivity and biological implications are discussed for bis-intercalators, sterically restricted macrocyclic and threading bis-aromatics and intercalator - nucleobase conjugates.

Publication types

  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Animals
  • Base Sequence
  • DNA, Single-Stranded / genetics*
  • DNA, Single-Stranded / metabolism*
  • Humans
  • Hydrocarbons, Aromatic / chemistry*
  • Hydrocarbons, Aromatic / metabolism*
  • Intercalating Agents / chemistry
  • Intercalating Agents / metabolism
  • RNA, Double-Stranded / genetics*
  • RNA, Double-Stranded / metabolism*
  • Structure-Activity Relationship
  • Water / chemistry*

Substances

  • DNA, Single-Stranded
  • Hydrocarbons, Aromatic
  • Intercalating Agents
  • RNA, Double-Stranded
  • Water