Sequence-specific recognition of methylated DNA by human zinc-finger proteins

Nucleic Acids Res. 2010 Aug;38(15):5015-22. doi: 10.1093/nar/gkq280. Epub 2010 Apr 19.

Abstract

DNA methylation is an essential epigenetic mark. Three classes of mammalian proteins recognize methylated DNA: MBD proteins, SRA proteins and the zinc-finger proteins Kaiso, ZBTB4 and ZBTB38. The last three proteins can bind either methylated DNA or unmethylated consensus sequences; how this is achieved is largely unclear. Here, we report that the human zinc-finger proteins Kaiso, ZBTB4 and ZBTB38 can bind methylated DNA in a sequence-specific manner, and that they may use a mode of binding common to other zinc-finger proteins. This suggests that many other sequence-specific methyl binding proteins may exist.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Binding Sites
  • Consensus Sequence
  • DNA Methylation*
  • DNA-Binding Proteins / chemistry
  • DNA-Binding Proteins / metabolism*
  • Humans
  • Protein Binding
  • Repressor Proteins / chemistry
  • Repressor Proteins / metabolism*
  • Transcription Factors / metabolism

Substances

  • DNA-Binding Proteins
  • Repressor Proteins
  • Transcription Factors
  • ZBTB33 protein, human
  • ZBTB38 protein, human
  • ZBTB4 protein, human