Crystallization of the pneumococcal autolysin LytC: in-house phasing using novel lanthanide complexes

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Apr 1;66(Pt 4):448-51. doi: 10.1107/S1744309110006081. Epub 2010 Mar 31.

Abstract

LytC, one of the major autolysins from the human pathogen Streptococcus pneumoniae, has been crystallized as needles by the hanging-drop technique using 10%(w/v) PEG 3350 as precipitant and 10 mM HEPES pH 7.5. LytC crystals were quickly soaked in mother liquor containing 2 mM of the complex Gd-HPDO3A to produce derivatized crystals (LytC(Gd-HPDO3A)). Both native LytC and isomorphous LytC(Gd-HPDO3A) crystals were flash-cooled in a nitrogen flow at 120 K prior to X-ray data collection using an in-house Enraf-Nonius rotating-anode generator (lambda = 1.5418 A) and a MAR345 imaging-plate detector. In both cases, good-quality diffraction patterns were obtained at high resolution. LytC(Gd-HPDO3A) crystals allowed the collection of a SAD X-ray data set to 2.6 A resolution indexed in terms of a P2(1) monoclinic unit cell with parameters a = 59.37, b = 67.16, c = 78.85 A, beta = 105.69 degrees . The anomalous Patterson map allowed the identification of one heavy-atom binding site, which was sufficient for the calculation of an interpretable anomalous map at 2.6 A resolution.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Crystallization
  • Crystallography, X-Ray
  • Gadolinium
  • Heterocyclic Compounds / chemistry*
  • Molecular Structure
  • N-Acetylmuramoyl-L-alanine Amidase / chemistry*
  • Organometallic Compounds / chemistry*
  • Streptococcus pneumoniae / enzymology*

Substances

  • Heterocyclic Compounds
  • Organometallic Compounds
  • gadoteridol
  • Gadolinium
  • LytC protein, Streptococcus
  • N-Acetylmuramoyl-L-alanine Amidase