Splicing of yeast aI5beta group I intron requires SUV3 to recycle MRS1 via mitochondrial degradosome-promoted decay of excised intron ribonucleoprotein (RNP)

J Biol Chem. 2010 Mar 19;285(12):8585-94. doi: 10.1074/jbc.M109.090761. Epub 2010 Jan 11.

Abstract

Yeast Suv3p is a member of the DEXH/D box family of RNA helicases and is a critical component of the mitochondrial degradosome, which also includes a 3' --> 5' exonuclease, Dss1p. Defects in the degradosome result in accumulation of aberrant transcripts, unprocessed transcripts, and excised group I introns. In addition, defects in SUV3 result in decreased splicing of the aI5beta and bI3 group I introns. Whereas a role for Suv3p in RNA degradation is well established, the function of Suv3p in splicing of group I introns has remained elusive. It has been particularly challenging to determine if Suv3p effects group I intron splicing through RNA degradation as part of the degradosome, or has a direct role in splicing as a chaperone, because nearly all perturbations of SUV3 or DSS1 result in loss of the mitochondrial genome. Here we utilized the suv3-1 allele, which is defective in RNA metabolism and yet maintains a stable mitochondrial genome, to investigate the role of Suv3p in splicing of the aI5beta group I intron. We provide genetic evidence that Mrs1p is a limiting cofactor for aI5beta splicing, and this evidence also suggests that Suv3p activity is required to recycle the excised aI5beta ribonucleoprotein. We also show that Suv3p acts indirectly as a component of the degradosome to promote aI5beta splicing. We present a model whereby defects in Suv3p result in accumulation of stable, excised group I intron ribonucleoproteins, which result in sequestration of Mrs1p, and a concomitant reduction in splicing of aI5beta.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Alleles
  • Alternative Splicing
  • Base Sequence
  • DEAD-box RNA Helicases / metabolism*
  • Introns*
  • Mitochondria / metabolism*
  • Mitochondrial Proteins / chemistry
  • Molecular Sequence Data
  • Nucleic Acid Conformation
  • Protein Isoforms*
  • Protein Structure, Tertiary
  • RNA Helicases / chemistry
  • RNA, Fungal / chemistry
  • RNA, Fungal / metabolism
  • RNA-Binding Proteins / chemistry
  • Ribonucleoproteins / chemistry*
  • Saccharomyces cerevisiae / metabolism*
  • Saccharomyces cerevisiae Proteins / chemistry
  • Saccharomyces cerevisiae Proteins / genetics*
  • Saccharomyces cerevisiae Proteins / metabolism

Substances

  • MRS1 protein, S cerevisiae
  • Mitochondrial Proteins
  • Protein Isoforms
  • RNA, Fungal
  • RNA-Binding Proteins
  • Ribonucleoproteins
  • Saccharomyces cerevisiae Proteins
  • SUV3 protein, S cerevisiae
  • DEAD-box RNA Helicases
  • RNA Helicases