Fine mapping of a gene for low-tiller number, Ltn, in japonica rice (Oryza sativa L.) variety Aikawa 1

Theor Appl Genet. 2010 Apr;120(6):1233-40. doi: 10.1007/s00122-009-1251-7.

Abstract

Tillering is one of the most important agronomic traits related to grain production in rice (Oryza sativa L.). A japonica-type variety, Aikawa 1, is known to have low-tiller number. The detailed location of a low-tillering gene, Ltn, which has been localized on chromosome 8 in Aikawa 1, was confirmed by molecular mapping. Using BC5F2 individuals derived from a cross between IR64 and Aikawa 1, the low-tillering gene was mapped to an interval defined by SSR markers ssr5816-3 and A4765. This was designated as Ltn because there was no reported gene for tillering in the region of chromosome 8. Through high-resolution linkage analysis, the candidate region of Ltn was located between DNA markers ssr6049-23 and ind6049-1 corresponding to 38.6 kbp on the Nipponbare genome sequence. These DNA markers, which were tightly linked to Ltn, are useful for marker-assisted selection in breeding studies.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Agriculture*
  • Base Pairing / genetics
  • Chromosome Mapping / methods*
  • Chromosome Segregation / genetics
  • Chromosomes, Plant / genetics
  • Crosses, Genetic
  • Genes, Plant / genetics*
  • Genetic Linkage
  • Genetic Markers
  • Genotype
  • Inbreeding
  • Oryza / genetics*
  • Oryza / growth & development*
  • Phenotype
  • Quantitative Trait, Heritable*

Substances

  • Genetic Markers