A Sabin 2-related poliovirus recombinant contains a homologous sequence of human enterovirus species C in the viral polymerase coding region

Arch Virol. 2010 Feb;155(2):197-205. doi: 10.1007/s00705-009-0564-9. Epub 2009 Nov 28.

Abstract

A type 2 vaccine-related poliovirus (strain CHN3024), differing from the Sabin 2 strain by 0.44% in the VP1 coding region was isolated from a patient with vaccine-associated paralytic poliomyelitis. Sequences downstream of nucleotide position 6735 (3D(pol) coding region) were derived from an unidentified sequence; no close match for a potential parent was found, but it could be classified into a non-polio human enteroviruses species C (HEV-C) phylogeny. The virus differed antigenically from the parental Sabin strain, having an amino acid substitution in the neutralizing antigenic site 1. The similarity between CHN3024 and Sabin 2 sequences suggests that the recombination was recent; this is supported by the estimation that the initiating OPV dose was given only 36-75 days before sampling. The patient's clinical manifestations, intratypic differentiation examination, and whole-genome sequencing showed that this recombinant exhibited characteristics of neurovirulent vaccine-derived polioviruses (VDPV), which may, thus, pose a potential threat to a polio-free world.

Publication types

  • Case Reports
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Substitution / genetics
  • Cluster Analysis
  • DNA-Directed RNA Polymerases / genetics*
  • Epitopes / genetics
  • Female
  • Humans
  • Infant
  • Mutation, Missense
  • Phylogeny
  • Poliomyelitis / virology
  • Poliovirus / genetics*
  • Poliovirus / isolation & purification
  • Poliovirus Vaccine, Oral / adverse effects
  • RNA, Viral / genetics*
  • Recombination, Genetic*
  • Sequence Analysis, DNA
  • Sequence Homology
  • Viral Proteins / genetics*

Substances

  • Epitopes
  • Poliovirus Vaccine, Oral
  • RNA, Viral
  • Viral Proteins
  • DNA-Directed RNA Polymerases